Welcome to the Division of Epidemiology and Biostatistics
The Division of Epidemiology and Biostatistics leads teaching and research around quantitative research methods in the School and Faculty. Courses taught from the Division include Introduction to Epidemiology, Quantitative Research Methods, Advanced Epidemiology, Evidence-Based Health Care, Clinical Epidemiology, Infectious Diseases Epidemiology, Non-Communicable Diseases Epidemiology, and a range of biostatistics courses (in conjunction with the Department of Statistical Sciences).
Click here for information about our Masters Programme
The Division assists with undergraduate epidemiology and biostatistics teaching in the MBChB curriculum (including during Semesters 3-5, and as part of the 4th year Public Health teaching programme) and as part of research methods teaching for allied health sciences students.
The Division provides epidemiology and biostatistics teaching at both introductory and advanced levels. Most of the Division's teaching is through the Master of Public Health (MPH) programme, where the Division convenes the Epidemiology and Biostatistics track.
Courses taught by the Division include:
- Introduction to Epidemiology
- Advanced Epidemiology
- Clinical Epidemiology
- Seminars in Epidemiology
- Infectious Diseases Epidemiology (taught in conjunction with the Division of Public Health Medicine)
- Non-Communicable Diseases Epidemiology (taught in conjunction with the Division of Public Health Medicine)
- Evidence-Based Health Care (taught in conjunction with the Department of Medicine)
- Biostatistics I (Introduction to Biostatistics)
- Biostatistics II (Linear & Logistic Regression Modelling)
- Biostatistics III (Survival analyses and advanced topics) (taught in conjunction with the Department of Statistical Sciences)
Additional teaching takes place on a range of short-courses and special seminars throughout the Faculty. This additional teaching typically focuses on either general research methods (study design, measurement, causal inference, etc) and/or specific advanced topics. Recent topics for short-courses and seminars include:
- mathematical modelling of infectious diseases
- structural equation modelling
- missing data and imputation
- modelling for causal inference
In addition, the Division offers PhDs in Epidemiology and Biostatistics. While the PhD programme is by dissertation-only, most of our PhD students enter through the MPH, and/or participate in short-courses and seminars programme.
The Division of Epidemiology and Biostatistics offers an epidemiology and biostatistics consulting service within the Faculty of Health Sciences. The consulting unit provides services which include the following activities:
- Advice regarding research design, sample size, questionnaire development and data collection methodologies
- Guidance for data capturing and data management/cleaning
- Analysis and reporting of data and assistance with data interpretation
- Short training courses on request
Clientele include:
- Postgraduate student research projects (including Honours, research Masters, PhD)
Postdoctoral researchers - Research / academic staff
- For coursework masters students, assistance is provided only for dissertations and not for coursework assignments
Please note:
- A brief scoping consultation is provided at no cost prior to formally requesting consulting services.
- Thereafter, the unit operates on a cost-recovery basis and all billable work is charged for at an hourly rate (currently R500/hour), payable via internal fund transfer within 14 days of the completion of work. Note that we do not charge students directly, supervisors and/or units are responsible for funding statistical support if required by their students and must make initial contact.
- It is strongly recommended that clients contact the consulting unit prior to the onset of their project.
- Supervisors wishing to access services for student postgraduate projects are required to make initial request to the consulting unit.
- The service is provided subject to the availability of consultants. The consulting unit reserves the right to terminate or refuse service.
To request consulting services, please contact the unit via email: epibios.consult@uct.ac.za
Research interests and activities in the Division include:
- Methods for modelling longitudinal data
- Infectious diseases epidemiology, including HIV, tuberculosis and sexually transmitted infections
- Maternal and child health
- Cardiovascular diseases
- Women's reproductive health, including contraception and termination of pregnancy
Researchers in the Division collaborate with investigators in other parts of the School of Public Health (including CIDER) and the Faculty (including the Departments of Paediatrics and Child Health, Clinical and Laboratory Sciences, Psychiatry and Mental Health, Medicine). Below are some of the projects were are involved in:
Current Projects
Project leaders: Elaine Abrams (Paediatrics & Epidemiology, Mailman School of Public Health, ICAP Columbia University) Jennifer Jao (Paediatrics & Medicine, Feinberg School of Medicine, North-western University /Lurie Children’s Hospital)
Collaborating Universities: Columbia and North-western Universities |
Evaluation of Pre-Exposure Prophylaxis (PrEP) Initiation, Retention and Adherence in Pregnant and Breastfeeding Women (PrEP-PP)
Pregnant women at very high risk of HIV acquisition and HIV transmission to the infant. PrEP-PP (PrEP in Pregnant and Postpartum women) is an observational study that will determine the distribution of women across the PrEP cascade (i.e. PrEP initiation, continuation and adherence on PrEP) in a cohort of 1200 HIV-negative pregnant and breastfeeding adolescent girls (16+ years) and women. We are recruiting eligible, interested HIV-uninfected pregnant women from one public health facilities in Cape Town (Gugulethu). Women are recruited at their first antenatal visit and followed until 12 months postpartum. Our study will inform national and regional policymakers about the effectiveness of PrEP integration into antenatal (ANC) and postnatal care in high HIV incidence communities. Study counsellors enrol consecutive eligible, consenting pregnant adolescent girls (>16 years) and women in ANC (1200 pregnant women). The study offers HIV-uninfected pregnant women the choice to take pre-exposure prophylaxis (PrEP), an antiretroviral pill, to take daily to prevent HIV up to 99% in women who take it daily. We follow up women every 3 months until their baby is 12 months old. We launched the study in August 2019 and are continuing to follow up 1200 women in a cohort study through 2022. |
Past Projects
CareConekta
Project leaders: Tamsin Phillips (UCT), Kate Clouse (Vanderbilt University) Collaborating university: Vanderbilt University Funding statement: This study was funded by the US National Institutes of Health (NIH) under grant R34 MH118028. Formative work that led to the development of this study was funded by NIH under grant P30 AI110527 to the TN CFAR. Purpose of project Population mobility is common in South Africa, but important research gaps exist describing this mobility and its impact on engagement in HIV care. Postpartum women and their infants in South Africa are known to be at high risk of dropping out of HIV care after delivery and are frequently mobile. In previous work, we developed a beta version of a smartphone application (app) – CareConekta – that detects a user’s smartphone location to allow for prospective characterization of mobility. In this R34 (ClinicalTrials.gov NCT03836625) we are adapting and testing CareConekta to conduct essential formative work on mobility and evaluate an intervention – the CareConekta app plus text notifications and phone calls and/or WhatsApp messages – to facilitate engagement in HIV care during times of mobility. During the three-year project period, our first objective is to evaluate the feasibility, acceptability, and initial efficacy of using CareConekta as an intervention to improve engagement in HIV care. Our second objective is to characterize mobility among South African women during the peripartum period and its impact on engagement in HIV care. We will enroll 200 eligible pregnant women living with HIV and receiving care at the Gugulethu Midwife Obstetric Unit in Cape Town, South Africa.
Left to right: Kate Clouse, Sindiswa Madwayi, Megan Mrubata, Sandisiwe Noholoza, Tammy Phillips
|
Routine Electronic Mother-Infant Data (Remind) to Support Retention in Postpartum HIV Treatment and Early Infant Diagnosis Services in South Africa
Project leader: Tamsin Phillips Funding statement: Funding for this project was made possible in full by a CIPHER grant from the International AIDS Society. Purpose of project Maternal loss from antiretroviral therapy (ART) and incomplete early infant diagnosis (EID) are common in high HIV-burden settings. The proposed study, centred at a large primary care clinic in Gugulethu, Cape Town, will leverage existing central routine electronic data sources to identify MIPs with key gaps in PMTCT and facilitate linkage back to care. A prospective cohort of 400 peripartum women living with HIV and age 18 or older will be recruited. Them and their babies will be monitored in the routine medical record data through 9 months postpartum to identify gaps in routine PMTCT care. The specific aims are:
|
Improving Chronic Disease Monitoring in Resource Limited Settings: Simulation and Economic Evaluation Approaches |
Exploring the Burden and Impact of Cardio-Metabolic Complications During Pregnancy in the Context of High Obesity and HIV Burden in South Africa (CAMP) Angela Bengtson (Brown University) Hlengiwe Madlala (UCT SPH)
|
The Relationship Between Postpartum Weight Retention and Metabolic Outcomes in HIV-infected and -uninfected Women in Cape Town, South Africa: (P-CAMP) Landon Myer (UCT SPH) Angela Bengtson (Brown University)
|
Inflammation and Immune Activation in Pregnancy: Fetal Inflammation and Maternal Obesity (iMAP) Hlengiwe Madlala (UCT SPH) Landon Myer (UCT SPH) Jennifer Jao (Northwestern University/Lurie Children’s Hospital) Marie-Louise Newell (Southampton University), Thoko Malaba (UCT SPH) |
The Division of Epidemiology and Biostatistics is offering a variety of R training courses for 2024, and annually thereafter. Each workshop will be approximately 2-3 hours long. The workshops are numbered according to (roughly) the order they should be taken in. Registration and venue details to follow.
Date (Time) | Topic | Level | Registration |
Friday, 16 Feb (10:00-13:00) | 7. Advanced data handling | Advanced | https://forms.gle/kWWvoLFnZ6aQdz7H9 |
Friday, 01 Mar (10:00-13:00) | 8. Advanced modelling / analysis | Advanced | https://forms.gle/BYL6NRmGgCtBz8xz7 |
Friday, 08 Mar (10:00-13:00) | 1. Introduction to R | Beginner | https://forms.gle/927PxoRh8ohpqU3o9 |
Friday, 22 Mar (10:00-13:00) | 9. Data visualization with R | Advanced | https://forms.gle/z6PKLoTeiVceAhSG6 |
Friday, 05 Apr (10:00-13:00) | 2. Group summaries and comparisons + epiR Part 1 | Beginner | https://forms.gle/apaDYSSQXFVjRD9T7 |
Friday, 12 Apr (10:00-13:00) | 3. Group summaries and comparisons + epiR Part 2 | Beginner | https://forms.gle/z3ZzBaXx9tYUQDMu9 |
Friday, 02 Aug (10:00-13:00) | 4. Regression and GLM | Intermediate | https://forms.gle/RCYokYtQVHt1ZjkLA |
Friday, 16 Aug (10:00-13:00) | 5. Intermediate data analysis | Intermediate | https://forms.gle/tcCYu4obFsTCPFP18 |
Friday, 13 Sep (10:00-13:00) | 6. Survival analysis | Intermediate | https://forms.gle/izyWSjv4cu22anM59 |
Fees:
For currently registered staff or students in the School of Public Health there is no fee. For all other participants, there is a R500/course fee payable through internal journal transfer only. You must be a member of UCT (ie have a valid UCT email address) in order to participate. A signed journal or proof of transfer will be required before access is granted.
How to register:
Follow the link for the course you want to register for. It is a small form that collects email addresses. Please use your UCT email address.
Request the internal journal transfer to 232826, PPH1228. Please send proof of payment to: Mikateko Sithole.
You will receive a link to the online meeting venue, plus other information a few days before the scheduled workshop once registered and proof of payment submitted via your UCT email.
Course content:
These courses are mainly aimed at current MPH and PhD students in the School of Public Health, and so are oriented towards serving those groups as they complete their coursework and dissertation. Instructors and content will vary by course. These courses will be offered annually.
If you would like to discuss a bespoke course please email epibios.consult@uct.ac.za
Contact:
For admin matters please contact Senior Secretary Mikateko.Sithole@uct.ac.za
For other matters relating to the Division, please contact Head of Division Landon.Myer@uct.ac.za
Landon Myer, Professor and Head of Division Qualifications: BA Brown MA MBChB Cape Town MPhil PhD Columbia Areas of interest: Epidemiology, HIV, Non-Communicable Diseases, Women, Reproductive Health, Maternal & Child Health Email: landon.myer@uct.ac.za Phone: 021 406 6661 |
Lara Dugas, Professor and AXA Research Chair in Non-Communicable Disease (NCD) Epidemiology (2021-2026)
Areas of interest: Non-communicable diseases, gut microbiota
Email: Lara.Dugas@uct.ac.za
|
Alex de Voux, Senior Lecturer
Areas of interest: curable sexually transmitted infections, point-of-care STI testing Email: alex.devoux@uct.ac.za |
Tamsin Phillips, Senior Lecturer/Research Officer
Areas of interest: HIV, continuity of care, patient choice
|
Hlengiwe Madlala, Lecturer/Research Officer
Areas of interest: Obesity and metabolic outcomes of pregnant and postpartum women and their children Email: Hlengiwe.madlala@uct.ac.za
|
Elton Mukonda, Lecturer/Research Officer
Areas of interest: Improving chronic disease monitoring in resource limited settings: simulation and economic evaluation approaches. Email: elton.mukonda@uct.ac.za
|
Thokozile Malaba, Lecturer/Research Officer
Areas of interest: Perinatal epidemiology, research methodology, observational research, maternal and child health Email: Thoko.Malaba@uct.ac.za
|
Frissiano Honwana, Assistant Lecturer
Areas of interest: Prognosis, Prediction Models, Biomarkers, Biostatistics Email: Frissiano.Honwana@uct.ac.za
|
Jasantha Odayar, Clinical Research Officer
Qualifications: MBChB, DipHIVMan, DTM&H, MPH
Email: Jasantha.Odayar@uct.ac.za |
Honorary Professors:
D Bradshaw |
S Delaney-Moretlwe |
J McIntyre |
C Wiysonge |
Honorary Associate Professors:
N Ford |
M Rangaka |
S Reynolds |
Adjunct Associate Professor:
T Tucker |
Honorary Senior Lecturers:
Annibale Cois
Areas of interest: Non-communicable diseases and advanced statistical analysis for joint analysis of heterogenous data sources
|
Dvora Joseph Davey
Areas of interest: HIV prevention, pregnant and lactating people, biomedical interventions
|
N Geffen |
A Hohlfield |
Kevin Kelly |
A Nelson |
Jennifer Pellowski |
Melissa Wallace |
Honorary Research Associate:
Jabulani Ncayiyana
Areas of interest: infectious diseases, child and adolescent health, spatial epidemiology and implementation science
|
PhD Candidates:
Eke Arua
Areas of interest: Geospatial methods and disease mapping |
Luke Hannan
|
Phepo Mogoba
Areas of interest: HIV, Adolescent maternal and child health, Implementation science |
Mothabisi Nyathi
Areas of interest: child and adolescent health in the context of HIV and TB, Human migration, and longitudinal data analysis |
Administrative Staff:
VACANT, Administrative Assistant
|
Research Staff:
Chad Africa, Project Co-ordinator Qualifications: BSc Hons, MPH Research Interests: Non-communicable diseases, physical activity, type two diabetes mellitus, obesity, gut microbiome |
Kalisha Bheemraj, Data Analyst
Research interests: Health care analytics, HIV prevention and care |
Naomi Ndakapara Chitsa, Research Assistant Qualifications: BSocSc, BA Hons, Project Management Cert, P. Dip, MPH
|
Sumaya Dadan, Study Coordinator |
Jess Davies, Research Assistant
|
Hayli Geffen, Data Analyst
Areas of interest: Longitudinal data analysis, Survival analysis, Supervised Learning |
Yolanda Gomba, Study Coordinator
Areas of interest: Implementation evaluations of HIV interventions |
Nai-Chung Hu, Laboratory Manager
|
Demi Meyer, Study Coordinator
Areas of interest: Spatial Epidemiology, Child/Maternal Health |
Dineo Mathabela, Laboratory Technician
|
Natasha Moodaley, Project Manager
|
Megan Mrubata, Site Coordinator
|
Ncumisa Msolo, Study Coordinator
|
Rufaro Mvududu, Study Coordinator
|
Sandisiwe Matyesini, Study Coordinator
Areas of interest: Public Health, Social Justice, Clinical Research, Wellness |
Thabang Serakge, Laboratory Technician Qualifications: BSc, BS Hons, MMed, MPH Areas of interest: Maternal & child health, diabetes, and gut microbiome |
Mustafa Shuaib, Data Analyst Qualifications: BDS, MPH Areas of interest: Quantitative Epidemiology - Chronic Diseases |
Lee-Ann Stemmet, Data Analyst Qualifications: BA Hons UNISA |
Helene Theunissen, Data Analyst
|
Nuraan Norodien, Research Administrator
|